Skip to content

HPC @ QMUL WN nodes

HPC @ QMUL

Home
Request a service
Request a service
Introduction
Introduction
HPC Compute Nodes
HPC Compute Nodes
- Overview
- DN nodes
- NXG nodes
- NXN nodes
- NXV nodes
- SBG nodes
- SDV nodes
- SDX nodes
- SM nodes
- SRM nodes
- WN nodes WN nodes
  Table of contents
  - Accessing the WN nodes
Using the cluster
Using the cluster
Storage
Storage
- Storage Systems
- Quotas
- Using $TMPDIR
- Scratch
- Moving Data
- Deleting files
- Backups and Snapshots
- Public datasets
- Globus
  Globus
  - Getting Started
  - Creating an Account
  - Basic Usage
    Basic Usage
    
    Access a collection
    
    File transfer
    
    Managing Groups
Application Documentation
Application Documentation
- Overview
- Application List
- Singularity Containers
  Singularity Containers
- Languages
  Languages
  - Anaconda
  - Java
  - Julia
  - Python
  - R
  - Ruby
  - SBCL
- Development Tools and Libraries
  Development Tools and Libraries
- Data Management
  Data Management
  - GDAL
  - HDF5
  - UDUNITS
- Numerical Libraries
  Numerical Libraries
  - FFTW
  - GSL
- General Applications
  General Applications
  - FFmpeg
  - GNU Parallel
  - Legacy applications
  - Metis
  - Pandoc
  - Pigz
  - Zstd
- BioInformatics Apps
  BioInformatics Apps
  - ABySS
  - ANGSD
  - ANNOVAR
  - BamUtil
  - Bartender
  - BCFtools
  - BEDOPS
  - Bedtools
  - BGEN
  - Bismark
  - BLAST+
  - Blobtools
  - Bowtie
  - Bowtie2
  - BUCKy
  - BUSCO
  - BWA
  - Canu
  - CAVIAR
  - Cell Ranger
  - Cufflinks
  - DIAMOND
  - Ensembl-VEP
  - Entrez
  - EPACTS
  - Exomiser
  - FastME
  - Fastqc
  - Flye
  - FRC_align
  - FreeBayes
  - FREEC
  - GATK
  - Genometools
  - Guidance
  - HyPhy
  - jModelTest2
  - KMC
  - Kraken
  - LAST
  - LASTZ
  - LDhelmet
  - Long Ranger
  - MaSuRCA
  - MCL
  - Meerkat
  - Migrate
  - Minimap2
  - MIRA
  - Mothur
  - MSMC
  - MutScan
  - Nextflow
  - Phylobayes
  - Plink
  - Qualimap
  - QUAST
  - RAxML
  - RAxML Next Generation
  - RELION
  - RSEM
  - Salmon
  - SAMtools
  - Scrappie
  - Seqtk
  - Skewer
  - SLiM
  - SPAdes
  - Stacks
  - STAR
  - Supernova
  - Taiyaki
  - TransDecoder
  - Trim Galore
  - Trinity
  - Wise2
  - Wtdbg2
- Chemistry Apps
  Chemistry Apps
  - AMBER
  - CASTEP
  - CRYSTAL
  - DL_POLY
  - DL_POLY Classic
  - GAMESS
  - Gaussian
  - Gromacs
  - LAMMPS
  - MOPAC2016
  - Open Babel
  - OpenMolcas
  - Quantum Espresso
  - RMCProfile
  - ShengBTE
  - TRAVIS
  - VMD
- Engineering Apps
  Engineering Apps
  - Abaqus
  - Ansys
  - CST
  - Star-ccm+
- Machine Learning
  Machine Learning
  - DeepLabCut
  - PyTorch
  - SMAC3
  - TensorFlow
- Mathematical Apps
  Mathematical Apps
  - Mathematica
  - Matlab
  - Scilab
  - Stata
Github Enterprise
Tier 2 HPC
Grant Costing
Blog
About this site
About this site
- About
- Formatting
  Formatting
  - Formatting Pages
  - Templates
    Templates
    
    App page

WN nodes¶

There are 2 IBM AC922 8335-GTG POWER9 nodes on Apocrita which are equipped with 4 Nvidia Tesla V100 16GB GPUs. These compute nodes use a ppc64le processor which is different from the more common x86_64, this means code needs to be recompiled on the Power nodes.

WN
Count	2
Processor	2 x 20 Core Power9 Witherspoon
GPU cores	20480 CUDA cores over 4 GPUs
Cores/Node	40
Threads/Node	160
RAM	314GB
TMP Size	839GB

Accessing the WN nodes¶

Access is permitted to QMUL researchers upon request. Please raise a support ticket by emailing its-research-support@qmul.ac.uk with a brief overview of intended use, so that we can verify that the jobs will run correctly on the POWER9 architecture.