MAFFT¶
Multiple alignment program for amino acid or nucleotide sequences.
MAFFT is available as a module on Apocrita.
Usage¶
To run the default installed version of MAFFT, simply load the mafft
module:
module load mafft
For usage documentation, run mafft --help.
Example job¶
Serial job¶
Here is an example job running on 2 cores and 2GB of memory:
#!/bin/bash
#$ -cwd
#$ -j y
#$ -pe smp 2
#$ -l h_rt=1:0:0
#$ -l h_vmem=1G
module load mafft
mafft --thread ${NSLOTS} \
input > output