SLiM¶
SLiM is an evolutionary simulation framework that combines a powerful engine for population genetic simulations with the capability of modelling arbitrarily complex evolutionary scenarios.
SLiM is available as a module on Apocrita.
Usage¶
To run the default version of SLiM, simply load the slim module:
$ module load slim
$ slim -v
SLiM version 3.3, built Sep 3 2019 13:29:18
Core Usage
SLiM does not support multiple threads and can only use one core.
Always use #$ -pe smp 1 when using SLiM.
Example job¶
Serial job¶
Here is an example job running on 1 core and 1GB of memory:
#!/bin/bash
#$ -cwd
#$ -j y
#$ -pe smp 1
#$ -l h_rt=1:0:0
#$ -l h_vmem=1G
module load slim
slim eidos_input_file.slim