FRC_align¶
FRC_align is a tool able to evaluate and analyse predictive assembly/assemblers.
FRC_align is available as a module on Apocrita.
Usage¶
To run the default installed version of FRC_align, simply load the
frc-align module:
$ module load frc-align
$ FRC --pe-sam <input_file> --genome-size <size> --output <output_file>
For full usage documentation, run FRC --help
Example job¶
Serial job¶
Here is an example job running on 4 cores and 4GB of memory:
#!/bin/bash
#$ -cwd
#$ -j y
#$ -pe smp 4
#$ -l h_vmem=1G
#$ -l h_rt=1:0:0
module load frc-align
FRC --pe-sam Illumina.bam --genome-size 450000000 --output output_frc