MCL¶
Markov Cluster Algorithm (MCL) is a fast and scalable unsupervised cluster algorithm for graphs based on simulation of (stochastic) flow in graphs.
MCL is available as a module on Apocrita.
Usage¶
To run the default installed version of MCL, simply load the mcl
module:
$ module load mcl
$ mcl
[mcl] usage: mcl <-|file name> [options], do 'mcl -h' or 'man mcl' for help
For usage documentation, run mcl --help.
Example job¶
Serial job¶
Here is an example job running on 1 core and 2GB of memory:
#!/bin/bash
#$ -cwd
#$ -j y
#$ -pe smp 1
#$ -l h_rt=1:0:0
#$ -l h_vmem=1G
module load mcl
mcxload -abc file.abc -o seq.mci
mcl seq.mci