Migrate¶
Migrate estimates population parameters, effective population sizes and migration rates of populations, using genetic data. It uses a coalescent theory approach taking into account history of mutations and uncertainty of the genealogy.
Migrate is available as a module on Apocrita.
Usage¶
To run the default installed version of Migrate, simply load the
migrate module:
$ module load migrate
$ migrate-n-mpi -h
Usage: migrate-n-mpi <input file>
For full usage documentation, run migrate-n-mpi -h.
Example job¶
Parallel job¶
Here is an example job running on 96 cores across 2 ddy nodes using MPI:
#!/bin/bash
#$ -cwd
#$ -j y
#$ -pe parallel 96
#$ -l infiniband=ddy-i
#$ -l h_rt=240:0:0
module load migrate
mpirun -np ${NSLOTS} migrate-n-mpi parmfile.testbayes