Wise2¶
Wise2 is a program for aligning proteins or protein HMMs to DNA. Its key program is genewise, a program for aligning proteins or protein HMMs to DNA.
Wise2 is available as a module on Apocrita.
Usage¶
To run the default installed version of Wise2, simply load the
wise2 module:
$ module load wise2
$ genewise -help
Usage: genewise <protein-file> <dna-file> in fasta format
For full usage documentation, run genewise -help.
Example job¶
Serial job¶
Here is an example job running on 1 core and 1GB of memory:
#!/bin/bash
#$ -cwd
#$ -j y
#$ -pe smp 1
#$ -l h_vmem=1G
#$ -l h_rt=1:0:0
module load wise2
genewise road.pep human.genomic