COLMAP¶
COLMAP is a general-purpose Structure-from-Motion (SfM) and Multi-View Stereo (MVS) pipeline with several features for the reconstruction of ordered and unordered image collections.
COLMAP is available as a module which wraps an Apptainer container on Apocrita.
Usage¶
GUI support via OnDemand
To use the COLMAP GUI, launch the software via the OnDemand COLMAP interactive app.
To run the default version of COLMAP, simply load the colmap module:
$ module load colmap
$ colmap --help
Usage:
colmap [command] [options]
Documentation:
https://colmap.github.io/
Example usage:
colmap help [ -h, --help ]
colmap automatic_reconstructor -h [ --help ]
colmap automatic_reconstructor --image_path IMAGES --workspace_path WORKSPACE
colmap feature_extractor --image_path IMAGES --database_path DATABASE
colmap exhaustive_matcher --database_path DATABASE
colmap mapper --image_path IMAGES --database_path DATABASE --output_path MODEL
...
Example job¶
CPU and GPU utilisation
To ensure your job uses the requested cores and GPU, add the
--num_threads $NSLOTS and --gpu_index 0 parameters to your job script,
as shown below. Failure to add these parameters will result in your job
only using one core, significantly increasing the execution time for
your job.
GPU job¶
Here is an example job running on 1 GPU:
#!/bin/bash
#$ -cwd
#$ -j y
#$ -pe smp 12
#$ -l h_rt=240:0:0
#$ -l h_vmem=7.5G
#$ -l gpu=1
module load colmap
# Set the path to your dataset
export DATASET_PATH=/path/to/dataset
colmap automatic_reconstructor \
--workspace_path "${DATASET_PATH}" \
--image_path "${DATASET_PATH}/images" \
--num_threads "${NSLOTS}" \
--gpu_index 0