| 7zip |
16.02 |
16.02 |
| R |
3.3.2, 3.4.0, 3.4.2, 3.4.3, 3.5.1 |
3.5.1 |
| abaqus |
6.14-2, 2017 |
2017 |
| abyss |
2.0.2 |
2.0.2 |
| amber |
16 |
16 |
| anaconda2 |
5.2.0 |
5.2.0 |
| anaconda3 |
5.2.0 |
5.2.0 |
| angsd |
0.919 |
0.919 |
| annovar |
2018Apr16 |
2018Apr16 |
| ansys |
18.0.0 |
18.0.0 |
| arrayfire |
3.4.2 |
3.4.2 |
| asciinema |
1.3.0, 1.4.0 |
1.4.0 |
| aspell |
0.60.6 |
0.60.6 |
| aspera |
3.7.2 |
3.7.2 |
| atlas |
3.10.3 |
3.10.3 |
| augustus |
3.2.3 |
3.2.3 |
| autoconf-archive |
2017.09.28 |
2017.09.28 |
| bamtools |
2.4.1 |
2.4.1 |
| bamutil |
1.0.14 |
1.0.14 |
| bartender |
1.1 |
1.1 |
| bcftools |
1.4, 1.8 |
1.8 |
| bcl2fastq2 |
2.19.1 |
2.19.1 |
| bedtools |
2.26.0 |
2.26.0 |
| bismark |
0.19.0 |
0.19.0 |
| blast+ |
2.6.0, 2.7.1 |
2.7.1 |
| blat |
35 |
35 |
| blobtools |
0.9.19.6 |
0.9.19.6 |
| boost |
1.63.0, 1.68.0 |
1.68.0 |
| bowtie |
1.2.0 |
1.2.0 |
| bowtie2 |
2.3.1, 2.3.2, 2.3.4 |
2.3.4 |
| breakdancer |
1.4.5 |
1.4.5 |
| bucky |
1.4.4 |
1.4.4 |
| busco |
3.0 |
3.0 |
| bwa |
0.7.15, 0.7.17 |
0.7.17 |
| bwameth |
0.2.0 |
0.2.0 |
| canu |
1.5, 1.6 |
1.5 |
| castep |
18.1-intel |
|
| cellranger |
2.2.0 |
2.2.0 |
| clustalw |
2.1 |
2.1 |
| cmake |
3.8.0, 3.12.2 |
3.12.2 |
| cp2k |
4.1.0-intel, 5.1-openmpi-nxn, 4.1 |
5.1-openmpi-nxn |
| crystal17 |
1.0.1 |
1.0.1 |
| cuda |
8.0.44, 9.0.176, 9.2.88 |
8.0.44 |
| cudnn |
5.0-cuda8.0, 5.1-cuda8.0, 6.0-cuda8.0, 7.1-cuda-9.2, 7.4-cuda-9.0 |
6.0-cuda8.0 |
| cufflinks |
2.2.1 |
2.2.1 |
| diamond |
0.9.22 |
0.9.22 |
| dl_poly |
4.08-openmpi, 4.08-openmpi-gcc-nxn, 4.08-openmpi-gcc-nxv, 4.08-plumed |
4.08-openmpi |
| dl_poly-classic |
1.10 |
1.10 |
| eigen |
3.3.4 |
3.3.4 |
| emboss |
6.6.0 |
6.6.0 |
| ensembl-vep |
89.7, 92 |
92 |
| entrez |
201708 |
201708 |
| exomiser |
7.2.3 |
7.2.3 |
| exonerate |
2.4.0 |
2.4.0 |
| fastqc |
0.11.5 |
0.11.5 |
| ffmpeg |
3.2.4, 3.3.3, 4.0.2 |
4.0.2 |
| fftw |
3.3.6-pl1-intel, 3.3.6-pl2-gcc, 3.3.8-intelmpi, 3.3.8-openmpi |
3.3.6-pl1-intel |
| frc-align |
1.3.0 |
1.3.0 |
| freebayes |
1.1.0, 1.2.0 |
1.1.0 |
| freec |
11.5 |
11.5 |
| ga |
5.7 |
5.7 |
| gamess |
201704-R1 |
201704-R1 |
| gatk |
4.0.8.1 |
4.0.8.1 |
| gaussian |
g09_D01, g16 |
g09_D01 |
| gcc |
6.3.0, 7.1.0, 8.2.0 |
7.1.0 |
| gdal |
2.3.1 |
2.3.1 |
| gdb |
7.12 |
7.12 |
| genometools |
1.5.9 |
1.5.9 |
| git |
2.12.0, 2.19.0 |
2.19.0 |
| glfw |
3.2.1 |
3.2.1 |
| gmp |
6.1.2 |
6.1.2 |
| gnuplot |
5.2.0 |
5.2.0 |
| groff |
1.22.3 |
1.22.3 |
| gromacs |
5.1.4-gpu, 5.1.4-intelmpi, 2016.3-gpu, 2016.3-intelmpi, 2016.3-plumed, 2018.3-gpu, 2018.3-intelmpi, 2018.3-plumed |
2016.3-intelmpi |
| gsl |
2.4 |
2.4 |
| gstreamer |
1.14.2 |
|
| guidance |
2.02 |
2.02 |
| gulp |
5.0.1 |
5.0.1 |
| hdf5 |
1.10.2 |
1.10.2 |
| hdf5-parallel |
1.8.18-intel |
1.8.18-intel |
| hmmer |
3.1b2, 3.1b2-1 |
3.1b2-1 |
| htop |
2.0.2 |
2.0.2 |
| htslib |
1.4, 1.6, 1.8, 1.9 |
1.9 |
| hyphy |
2.3.6 |
2.3.6 |
| idl |
8.4.1 |
8.4.1 |
| imagemagick |
7.0.5-4 |
7.0.5-4 |
| intel |
2017.1, 2017.3, 2018.1, 2018.3 |
2018.3 |
| intelmpi |
2017.1, 2017.3, 2018.1, 2018.3 |
2018.3 |
| intelpython |
2.7.12-2017.2, 3.5.2-2017.2, 2.7.12, 3.5.2 |
3.5.2-2017.2 |
| java |
1.8.0_121-oracle, 1.8.0_152-oracle, 1.8.0_171-oracle, 9.0.1-oracle, 10.0.0-oracle |
1.8.0_171-oracle |
| jellyfish |
2.2.6 |
2.2.6 |
| jmodeltest2 |
2.1.10r20160303 |
2.1.10r20160303 |
| julia |
0.5.2, 0.5.2-1, 1.0.1 |
1.0.1 |
| kmc |
a09d63a4 |
a09d63a4 |
| kraken |
1.1 |
1.1 |
| lammps |
2Aug18, 11AUG17-intelmpi |
11AUG17-intelmpi |
| lapack |
3.7.0 |
3.7.0 |
| last |
869 |
869 |
| lastz |
1.04.00 |
1.04.00 |
| longranger |
2.1.3, 2.1.4, 2.2.2 |
2.2.2 |
| mafft |
7.310 |
7.310 |
| maker |
2.31.9-mpi, 2.31.9 |
2.31.9-mpi |
| masurca |
3.2.2, 3.2.8 |
3.2.8 |
| mathematica |
11.0.1, 11.3.0 |
11.3.0 |
| matlab |
2016a, 2017a, 2018a |
2018a |
| meerkat |
0.189 |
0.189 |
| metis |
5.1.0 |
5.1.0 |
| migrate |
3.6.11 |
3.6.11 |
| minimap2 |
2.5 |
2.5 |
| mira |
4.0.2 |
4.0.2 |
| mopac2016 |
18.063 |
18.063 |
| mothur |
1.39.5 |
1.39.5 |
| mrbayes |
3.2.6-mpi |
3.2.6-mpi |
| msmc |
1.1.0 |
1.1.0 |
| multisnv |
2.3-12 |
2.3-12 |
| muscle |
3.8.31 |
3.8.31 |
| namd |
2.12-gpu, 2.12-openmpi |
2.12-openmpi |
| nano |
2.8.6 |
2.8.6 |
| newick_utils |
1.6 |
1.6 |
| nextflow |
0.25.7, 0.26.3 |
0.26.3 |
| nwchem |
6.6-mpi |
6.6-mpi |
| octave |
4.2.1 |
4.2.1 |
| openbabel |
2.4.1 |
2.4.1 |
| openmolcas |
18.0 |
18.0 |
| openmpi |
2.1.0-gcc, 2.1.1-intel, 3.0.0-gcc, 3.1.2-gcc |
3.0.0-gcc |
| paml |
4.9e |
4.9e |
| papi |
5.6.0 |
5.6.0 |
| parallel |
20170422 |
20170422 |
| paraview |
4.4.0, 5.3.0 |
5.3.0 |
| perl |
5.24.1, 5.26.0 |
5.26.0 |
| pgi |
18.4, 18.10 |
18.4 |
| phylobayes |
4.1c |
4.1c |
| phylobayes-mpi |
01cbc7d |
01cbc7d |
| pigz |
2.4 |
|
| plink |
1.9-170906, 2.0-20170920 |
1.9-170906 |
| plumed |
2.4.0-intelmpi-nxv, 2.4.0-nxv, 2.4.0 |
2.4.0 |
| prank |
170427 |
170427 |
| primer3 |
2.4.0 |
2.4.0 |
| proj |
5.2.0 |
5.2.0 |
| python |
2.7.15, 3.6.3 |
3.6.3 |
| qe |
6.1.0-intelmpi, 6.3-intelmpi, 6.1.0, 6.3 |
6.3 |
| qt |
5.8.0 |
5.8.0 |
| qualimap |
2.2.1 |
2.2.1 |
| quast |
4.5-1, 4.6.1 |
4.6.1 |
| raxml |
8.2.11 |
8.2.11 |
| relion |
2.1-gpu |
2.1-gpu |
| repeatmasker |
4.0.7 |
4.0.7 |
| rmcprofile |
6.7.0 |
6.7.0 |
| ruby |
2.4.1 |
2.4.1 |
| samtools |
0.1.19, 1.4, 1.4.1, 1.6, 1.8, 1.9 |
1.9 |
| scalapack |
2.0.2-intel |
2.0.2-intel |
| scilab |
6.0.0 |
6.0.0 |
| scrappie |
1.4.1 |
1.4.1 |
| seqtk |
1.2 |
1.2 |
| shengbte |
1.1.1 |
1.1.1 |
| singularity |
2.6.1 |
2.6.1 |
| smac3 |
0.8.0 |
0.8.0 |
| soapdenovo2 |
r241 |
r241 |
| spades |
3.11.1 |
3.11.1 |
| sparsehash |
2.0.3 |
2.0.3 |
| spglib |
1.10.3 |
1.10.3 |
| sratools |
2.8.2-1 |
2.8.2-1 |
| stacks |
1.46 |
1.46 |
| star |
2.5.3a, 2.6.1a |
2.6.1a |
| starccm |
11.06.011-R8, 12.02.010, 12.02.010-R8, 12.06.011, 12.06.011-R8 |
12.06.011-R8 |
| stata |
13, 15 |
13 |
| swig |
3.0.12 |
3.0.12 |
| tbb |
2018_U2 |
2018_U2 |
| texinfo |
4.8 |
4.8 |
| tmux |
2.7 |
2.7 |
| tophat |
2.1.1 |
2.1.1 |
| transdecoder |
5.0.2 |
5.0.2 |
| trimgalore |
0.4.5-1 |
0.4.5-1 |
| trimmomatic |
0.36 |
0.36 |
| trinity |
2.4.0 |
2.4.0 |
| udunits |
2.2.26 |
2.2.26 |
| valgrind |
3.12.0 |
3.12.0 |
| vcftools |
0.1.15 |
0.1.15 |
| vmd |
1.9.3 |
1.9.3 |
| wise2 |
2.4.1 |
2.4.1 |
| yasm |
1.3.0 |
1.3.0 |
| zsh |
5.4.1, 5.4.2 |
5.4.2 |