Application list

Application Versions Default
7zip 16.02 16.02
abaqus 6.14-2, 2017, 2019, 2020 2020
abyss 2.0.2 2.0.2
alphafold 2.0.0, 2.1.0, 2.3.2 2.3.2
amber 16 16
anaconda2 5.2.0, 2018.12 2018.12
anaconda3 5.2.0, 2018.12, 2020.02, 2021.11, 2022.05, 2023.03 2023.03
angsd 0.919 0.919
annovar 2018Apr16 2018Apr16
ansys 18.0.0, 2019R1, 2019R3, 2021R2, 2023R2 2023R2
ant 1.10.6 1.10.6
arrayfire 3.4.2 3.4.2
asciinema 1.3.0, 1.4.0 1.4.0
aspell 0.60.6 0.60.6
aspera 3.7.2, 3.9.8 3.9.8
atlas 3.10.3 3.10.3
augustus 3.2.3 3.2.3
autoconf-archive 2017.09.28, 2019.01.06 2019.01.06
bamtools 2.4.1 2.4.1
bamutil 1.0.14 1.0.14
bartender 1.1 1.1
bcftools 1.4, 1.8, 1.10.2, 1.13, 1.16 1.16
bcl2fastq2 2.19.1, 2.20.0 2.20.0
bedops 2.4.35 2.4.35
bedtools 2.26.0, 2.28.0 2.28.0
bgen 1.1.6 1.1.6
bismark 0.19.0, 0.22.1 0.22.1
blast+ 2.6.0, 2.7.1, 2.11.0 2.11.0
blat 35 35
boost 1.63.0, 1.68.0 1.68.0
bowtie 1.2.0 1.2.0
bowtie2 2.3.1, 2.3.2, 2.3.4, 2.4.1, 2.4.5 2.4.5
breakdancer 1.4.5 1.4.5
bucky 1.4.4 1.4.4
busco 3.0 3.0
bwa 0.7.15, 0.7.17 0.7.17
bwameth 0.2.0 0.2.0
canu 1.5, 1.6 1.5
castep 18.1-intel, 19.1.1-intel, 23.1-intel 23.1-intel
catalyticfoam 8 8
caviar 2.2.0 2.2.0
cellranger 5.0.1, 6.0.1, 6.0.2, 7.1.0 7.1.0
cellranger-arc 2.0.0 2.0.0
cellranger-atac 1.2.0, 2.0.0 2.0.0
cfitsio 3.49, 4.0.0 4.0.0
clam 13Jan22 13Jan22
clustalw 2.1 2.1
cmake 3.8.0, 3.12.2, 3.15.1, 3.16.0, 3.23.1 3.23.1
colmap 3.8-gpu 3.8-gpu
compass 0.9.9.9 0.9.9.9
comsol 6.0 6.0
cp2k 4.1, 4.1.0-intel, 6.1.0-sdv, 2023.1, 2023.1-avx512 2023.1
crystal17 1.0.1 1.0.1
cst_studio 2019, 2021, 2022, 2023 2023
ctffind 4.1.14 4.1.14
cuda 8.0.44, 9.0.176, 9.2.88, 10.0.130, 10.1.243, 11.0.3, 11.2.2, 11.3.1, 11.6.2, 11.8.0, 12.0.0, 12.2.1 11.8.0
cudnn 5.0-cuda8.0, 5.1-cuda8.0, 6.0-cuda8.0, 7.1-cuda-9.2, 7.4-cuda-9.0, 7.5-cuda-10.0, 7.6-cuda-10.1, 7.6.5-cuda-10.0, 8.0-cuda11, 8.1.1-cuda11, 8.1.1-cuda11.2, 8.4.1-cuda11.6, 8.8.1-cuda12, 8.9.4-cuda12.2 8.4.1-cuda11.6
cufflinks 2.2.1 2.2.1
deeplabcut 2.2.0.2 2.2.0.2
diamond 0.9.22 0.9.22
dl_poly 4.08-openmpi, 4.08-openmpi-gcc-nxv, 4.08-plumed 4.08-openmpi
dl_poly-classic 1.10 1.10
dua 2.20.1 2.20.1
eigen 3.3.4 3.3.4
emacs 26.3, 27.1 27.1
emboss 6.6.0 6.6.0
ensembl-vep 89.7, 92, 96, 107 96
entrez 201708 201708
epacts 3.3.2 3.3.2
exomiser 7.2.3 7.2.3
exonerate 2.4.0 2.4.0
fastme 2.1.6.1 2.1.6.1
fastqc 0.11.5, 0.11.9 0.11.9
ffmpeg 3.2.4, 3.3.3, 4.0.2, 4.1.6 4.1.6
fftw 3.3.6-pl1-intel, 3.3.6-pl2-gcc, 3.3.8-intelmpi, 3.3.8-openmpi, 3.3.10-openmpi 3.3.10-openmpi
fgsl 1.3.0 1.3.0
flye 2.6, 2.8.3 2.6
frc-align 1.3.0 1.3.0
freebayes 1.1.0, 1.2.0, 1.3.1 1.3.1
freec 11.5 11.5
freesurfer 7.3.2 7.3.2
fsl 6.0.4 6.0.4
ga 5.7.0 5.7.0
gamess 201704-R1 201704-R1
gatk 4.0.8.1, 4.1.4.0, 4.1.6.0, 4.2.1.0, 4.2.6.1 4.2.6.1
gaussian g09_D01, g16 g16
gautomatch 0.56-gpu 0.56-gpu
gcc 4.8.5, 6.3.0, 7.1.0, 8.2.0, 10.2.0, 12.1.0 12.1.0
gcta 1.93.0b 1.93.0b
gdal 2.3.1 2.3.1
gdb 11.1 11.1
genometools 1.5.9 1.5.9
geos 3.7.1 3.7.1
ghostscript 9.20 9.20
git 2.39.2 2.39.2
glfw 3.2.1 3.2.1
gmp 6.1.2 6.1.2
gnuplot 5.2.0 5.2.0
go 1.13.1 1.13.1
groff 1.22.3 1.22.3
gromacs 5.1.4-gpu, 5.1.4-intelmpi, 2016.3-gpu, 2016.3-intelmpi, 2016.3-plumed, 2018.3-gpu, 2018.3-intelmpi, 2018.3-plumed, 2019.4-gpu, 2019.4-intelmpi, 2019.4-plumed, 2022.2-gpu, 2022.2-intelmpi 2022.2-intelmpi
gsl 2.4, 2.7.1 2.4
gstreamer 1.14.2 1.14.2
guidance 2.02 2.02
gulp 5.0.1, 6.0, 6.0-intelmpi 6.0
hdf5 1.10.2, 1.13.1-intel, 1.14.1-2, 1.14.1-2-nv 1.13.1-intel
hdf5-parallel 1.8.18-intel, 1.13.1-intel 1.13.1-intel
healpix 3.81 3.81
hmmer 3.1b2, 3.1b2-1 3.1b2-1
htop 2.0.2 2.0.2
htslib 1.4, 1.6, 1.8, 1.9, 1.10.2 1.10.2
hyphy 2.3.6, 2.5.1 2.5.1
idl 8.4.1 8.4.1
igv 2.13.0 2.13.0
imagemagick 7.0.5-4, 7.1.1-6 7.1.1-6
intel 2017.1, 2017.3, 2018.1, 2018.3, 2020.4, 2022.2 2022.2
intelmpi 2017.1, 2017.3, 2018.1, 2018.3, 2020.4, 2022.2 2022.2
intelpython 2.7.12-2017.2, 3.5.2-2017.2, 3.7.7-2020.4, 3.9.10-2022.2 3.5.2-2017.2
isaac-aligner 04.18.11.09 04.18.11.09
jags 4.3.0, 4.3.1, 4.3.2 4.3.1
java 1.8.0_382-openjdk, 9.0.1-oracle, 10.0.0-oracle, 11.0.20-openjdk, 17.0.0, 20.0.2 17.0.0
jdftx 1.7.0 1.7.0
jellyfish 1.1.12, 2.2.6 2.2.6
jmodeltest2 2.1.10r20160303 2.1.10r20160303
julia 0.5.2-1, 1.0.1, 1.4.2, 1.6.0 1.6.0
kmc a09d63a4 a09d63a4
kraken 1.1.1, 2.0.8, 2.1.1, 2.1.2 2.1.2
lammps 2Aug18, 2Aug2023, 3Mar20-intelmpi, 11AUG17-intelmpi 2Aug2023
lammps-gpu 2Aug2023-ampere, 2Aug2023-volta, 3Mar2020-volta, 15Sep2022-ampere, 15Sep2022-volta 2Aug2023-ampere
lapack 3.7.0, 3.9.0 3.9.0
last 869 869
lastz 1.04.00 1.04.00
ldhelmet 1.10 1.10
libsodium 1.0.19 1.0.19
lofreq 2.1.5 2.1.5
longranger 2.1.3, 2.1.4, 2.2.2 2.2.2
lua 5.4.1 5.4.1
macaulay2 1.21 1.21
mafft 7.310, 7.480 7.480
maker 2.31.9, 2.31.9-mpi 2.31.9-mpi
maple 2021, 2023 2023
masurca 3.2.2, 3.2.8, 4.0.8 4.0.8
mathematica 11.0.1, 11.3.0, 12.0.0, 12.2.0, 12.3.1, 13.0.1, 13.2.1 13.2.1
matlab 2016a, 2017a, 2018a, 2019a, 2020a, 2021a, 2022a, 2023a 2023a
mcl 14-137 14-137
meerkat 0.189 0.189
meshlab 2022.02 2022.02
metis 5.1.0 5.1.0
migrate 3.6.11 3.6.11
miniconda 4.12.0 4.12.0
minimap2 2.5 2.5
minkowski_engine 0.5.4 0.5.4
mira 4.0.2 4.0.2
mono 6.12.0 6.12.0
mopac2016 18.063 18.063
mothur 1.39.5 1.39.5
motioncor2 1.3.2 1.3.2
mpfr 4.1.0 4.1.0
mplus 8.7 8.7
mrbayes 3.2.6-mpi 3.2.6-mpi
msmc 1.1.0 1.1.0
multisnv 2.3-12 2.3-12
muscle 3.8.31 3.8.31
mutscan 1.14.0 1.14.0
nagfor 7.1-7105 7.1-7105
namd 2.12-gpu, 2.12-openmpi 2.12-openmpi
nano 2.8.6 2.8.6
nanopore_guppy 2.3.5, 3.5.2, 4.2.2, 4.5.3, 5.0.16, 6.2.1, 6.3.8, 6.5.7 6.5.7
neovim 0.8.3, 0.9.0 0.9.0
newick_utils 1.6 1.6
nextflow 0.25.7, 0.26.3, 19.04.1, 20.10.0, 21.10.6, 22.10.4 22.10.4
nvidia-hpc-sdk 21.3, 22.3 22.3
nvtools 1.0.0 1.0.0
nwchem 6.6-mpi 6.6-mpi
octave 4.2.1 4.2.1
openbabel 2.4.1 2.4.1
openbugs 3.2.3 3.2.3
openfoam 8, 2106 8
openmolcas 18.0 18.0
openmpi 2.1.0-gcc, 2.1.1-intel, 3.0.0-gcc, 3.1.2-gcc, 4.1.4-gcc 4.1.4-gcc
openssl 1.1.1s 1.1.1s
orca 5.0.3 5.0.3
paml 4.9e 4.9e
pandoc 1.19 1.19
papi 5.6.0 5.6.0
parallel 20170422 20170422
paraview 4.4.0, 5.9.1 5.9.1
pdftotext 0.26.5 0.26.5
perl 5.24.1, 5.26.0 5.26.0
perl5lib 5.26.0 5.26.0
phonemize 3.0.1 3.0.1
phylobayes 4.1c 4.1c
phylobayes-mpi 01cbc7d 01cbc7d
phyx 1.1 1.1
pigz 2.4, 2.6 2.6
plink 1.9-170906, 2.0-20170920, 2.0-20200328, 2.0-20220603 2.0-20220603
plumed 2.4.0, 2.4.0-intelmpi-nxv, 2.4.0-nxv 2.4.0
postgres 15.1 15.1
prank 170427 170427
primer3 2.4.0 2.4.0
proj 5.2.0 5.2.0
python 2.7.15, 3.6.3, 3.8.5, 3.10.7, 3.11.6 3.10.7
qctool 2.2.0 2.2.0
qe 6.1.0, 6.1.0-intelmpi, 6.3, 6.3-intelmpi 6.3
qiime2 2021.11 2021.11
qt 5.8.0 5.8.0
qualimap 2.2.1 2.2.1
quast 4.5-1, 4.6.1 4.6.1
qupath 0.2.3 0.2.3
R 3.3.2, 3.4.0, 3.4.2, 3.4.3, 3.5.1, 3.5.3, 3.6.1, 4.0.2, 4.1.1, 4.2.0, 4.2.2, 4.2.2-gcc10 4.2.2
raxml 8.2.11 8.2.11
raxml-ng 0.9.0 0.9.0
rclone 1.65.2 1.65.2
relion 2.1-gpu, 3.0, 3.0-gpu, 3.1.0, 3.1.3-gpu, 3.1.3-openmpi, 4.0-gpu, 4.0-openmpi 4.0-openmpi
repeatmasker 4.0.7 4.0.7
repeatmodeler 2.0.1 2.0.1
rmcprofile 6.7.0, 6.7.7 6.7.7
rsem 1.3.1 1.3.1
ruby 2.4.1 2.4.1
salmon 0.13.1, 1.2.1, 1.9.0 1.9.0
samtools 0.1.19, 1.4, 1.4.1, 1.6, 1.8, 1.9, 1.10 1.10
satsuma2 2.0 2.0
sbcl 1.5.4 1.5.4
scalapack 2.0.2-intel 2.0.2-intel
scilab 6.0.0 6.0.0
scrappie 1.4.1 1.4.1
seqtk 1.2 1.2
shapeit5 5.1.1 5.1.1
shengbte 1.1.1 1.1.1
skewer 0.2.2 0.2.2
slim 3.3 3.3
smac3 0.8.0 0.8.0
soapdenovo2 r241 r241
spaceranger 1.2.1, 1.3.1, 2.0.0 2.0.0
spades 3.11.1 3.11.1
sparsehash 2.0.3 2.0.3
spglib 1.10.3 1.10.3
sqlite 3.29.0, 3.36.0 3.36.0
sratools 2.8.2-1, 2.10.8 2.10.8
stacks 1.46, 2.41 2.41
star 2.5.3a, 2.6.1a, 2.7.0f, 2.7.9a 2.7.9a
starccm 12.06.011, 12.06.011-R8, 2019.1.1-R8, 2019.3-R8, 2020.1.1-R8, 2021.2.1-R8, 2302.0001-R8 2302.0001-R8
stata 13, 15, 18 15
subread 2.0.6 2.0.6
supernova 2.1.1 2.1.1
swig 3.0.12 3.0.12
tbb 2018_U2 2018_U2
tensorRT 6.0.1.5-cuda-10.1, 8.6.1.6-cuda12.2 6.0.1.5-cuda-10.1
texinfo 4.8, 6.6 6.6
tmux 2.7 2.7
tophat 2.1.1 2.1.1
transdecoder 5.0.2 5.0.2
travis 2019.1 2019.1
trimgalore 0.4.5-1, 0.6.5 0.6.5
trimmomatic 0.36 0.36
trinity 2.4.0, 2.14.0 2.14.0
udunits 2.2.26 2.2.26
valgrind 3.12.0 3.12.0
vasp 6.1.1, 6.1.1_vaspsol, 6.1.1_vtst, 6.3.1-gpu, 6.3.1-gpu-hdf5, 6.3.1-hdf5, 6.4.0, 6.4.0_wannier90, 6.4.2 6.4.2
vcftools 0.1.15, 0.1.16 0.1.16
vmd 1.9.3 1.9.3
vulkan-sdk 1.2.148.1, 1.2.176.1 1.2.176.1
wise2 2.4.1 2.4.1
wtdbg2 2.5 2.5
yasm 1.3.0 1.3.0
zsh 5.4.1, 5.4.2 5.4.2
zstd 1.4.3, 1.5.0 1.5.0