Application List

Application Versions Default
7zip 16.02 16.02
R 3.3.2, 3.4.0, 3.4.2, 3.4.3, 3.5.1, 3.5.3, 3.6.1 3.6.1
abaqus 6.14-2, 2017, 2019 2017
abyss 2.0.2 2.0.2
amber 16 16
anaconda2 5.2.0, 2018.12 5.2.0
anaconda3 5.2.0, 2018.12 5.2.0
angsd 0.919 0.919
annovar 2018Apr16 2018Apr16
ansys 18.0.0, 2019R1 18.0.0
ant 1.10.6 1.10.6
arrayfire 3.4.2 3.4.2
asciinema 1.3.0, 1.4.0 1.4.0
aspell 0.60.6 0.60.6
aspera 3.7.2 3.7.2
atlas 3.10.3 3.10.3
augustus 3.2.3 3.2.3
autoconf-archive 2017.09.28 2017.09.28
bamtools 2.4.1 2.4.1
bamutil 1.0.14 1.0.14
bartender 1.1 1.1
bcftools 1.4, 1.8 1.8
bcl2fastq2 2.19.1 2.19.1
bedops 2.4.35 2.4.35
bedtools 2.26.0 2.26.0
bismark 0.19.0, 0.22.1 0.22.1
blast+ 2.6.0, 2.7.1 2.7.1
blat 35 35
blobtools 0.9.19.6 0.9.19.6
boost 1.63.0, 1.68.0 1.68.0
bowtie 1.2.0 1.2.0
bowtie2 2.3.1, 2.3.2, 2.3.4 2.3.4
breakdancer 1.4.5 1.4.5
bucky 1.4.4 1.4.4
busco 3.0 3.0
bwa 0.7.15, 0.7.17 0.7.17
bwameth 0.2.0 0.2.0
canu 1.5, 1.6 1.5
castep 18.1-intel
cellranger 2.2.0, 3.0.2, 3.1.0 3.1.0
clustalw 2.1 2.1
cmake 3.8.0, 3.12.2, 3.15.1 3.15.1
cp2k 4.1.0-intel, 5.1-openmpi-nxn, 4.1 5.1-openmpi-nxn
crystal17 1.0.1 1.0.1
cuda 8.0.44, 9.0.176, 9.2.88, 10.0.130 10.0.130
cudnn 5.0-cuda8.0, 5.1-cuda8.0, 6.0-cuda8.0, 7.1-cuda-9.2, 7.4-cuda-9.0, 7.5-cuda-10.0 7.5-cuda-10.0
cufflinks 2.2.1 2.2.1
diamond 0.9.22 0.9.22
dl_poly 4.08-openmpi, 4.08-openmpi-gcc-nxn, 4.08-openmpi-gcc-nxv, 4.08-plumed 4.08-openmpi
dl_poly-classic 1.10 1.10
eigen 3.3.4 3.3.4
emboss 6.6.0 6.6.0
ensembl-vep 89.7, 92, 96 96
entrez 201708 201708
exomiser 7.2.3 7.2.3
exonerate 2.4.0 2.4.0
fastme 2.1.6.1 2.1.6.1
fastqc 0.11.5 0.11.5
ffmpeg 3.2.4, 3.3.3, 4.0.2 4.0.2
fftw 3.3.6-pl1-intel, 3.3.6-pl2-gcc, 3.3.8-intelmpi, 3.3.8-openmpi 3.3.6-pl1-intel
frc-align 1.3.0 1.3.0
freebayes 1.1.0, 1.2.0 1.1.0
freec 11.5 11.5
ga 5.7.0 5.7.0
gamess 201704-R1 201704-R1
gatk 4.0.8.1 4.0.8.1
gaussian g09_D01, g16 g09_D01
gcc 6.3.0, 7.1.0, 8.2.0 7.1.0
gdal 2.3.1 2.3.1
gdb 7.12 7.12
genometools 1.5.9 1.5.9
geos 3.7.1 3.7.1
git 2.12.0, 2.19.0 2.19.0
glfw 3.2.1 3.2.1
gmp 6.1.2 6.1.2
gnuplot 5.2.0 5.2.0
groff 1.22.3 1.22.3
gromacs 5.1.4-gpu, 5.1.4-intelmpi, 2016.3-gpu, 2016.3-intelmpi, 2016.3-plumed, 2018.3-gpu, 2018.3-intelmpi, 2018.3-plumed 2016.3-intelmpi
gsl 2.4 2.4
gstreamer 1.14.2
guidance 2.02 2.02
gulp 5.0.1 5.0.1
hdf5 1.10.2 1.10.2
hdf5-parallel 1.8.18-intel 1.8.18-intel
hmmer 3.1b2, 3.1b2-1 3.1b2-1
htop 2.0.2 2.0.2
htslib 1.4, 1.6, 1.8, 1.9 1.9
hyphy 2.3.6 2.3.6
idl 8.4.1 8.4.1
imagemagick 7.0.5-4 7.0.5-4
intel 2017.1, 2017.3, 2018.1, 2018.3 2018.3
intelmpi 2017.1, 2017.3, 2018.1, 2018.3 2018.3
intelpython 2.7.12-2017.2, 3.5.2-2017.2, 2.7.12, 3.5.2 3.5.2-2017.2
java 1.8.0_121-oracle, 1.8.0_152-oracle, 1.8.0_171-oracle, 9.0.1-oracle, 10.0.0-oracle, 11.0.2 1.8.0_171-oracle
jellyfish 1.1.12, 2.2.6 2.2.6
jmodeltest2 2.1.10r20160303 2.1.10r20160303
julia 0.5.2, 0.5.2-1, 1.0.1 1.0.1
kmc a09d63a4 a09d63a4
kraken 1.1.1 1.1.1
lammps 2Aug18, 11AUG17-intelmpi 11AUG17-intelmpi
lapack 3.7.0 3.7.0
last 869 869
lastz 1.04.00 1.04.00
longranger 2.1.3, 2.1.4, 2.2.2 2.2.2
mafft 7.310 7.310
maker 2.31.9-mpi, 2.31.9 2.31.9-mpi
masurca 3.2.2, 3.2.8 3.2.8
mathematica 11.0.1, 11.3.0, 12.0.0 12.0.0
matlab 2016a, 2017a, 2018a, 2019a 2018a
mcl 14-137 14-137
meerkat 0.189 0.189
metis 5.1.0 5.1.0
migrate 3.6.11 3.6.11
minimap2 2.5 2.5
mira 4.0.2 4.0.2
mopac2016 18.063 18.063
mothur 1.39.5 1.39.5
mrbayes 3.2.6-mpi 3.2.6-mpi
msmc 1.1.0 1.1.0
multisnv 2.3-12 2.3-12
muscle 3.8.31 3.8.31
nagfor 6.2-6227 6.2-6227
namd 2.12-gpu, 2.12-openmpi 2.12-openmpi
nano 2.8.6 2.8.6
newick_utils 1.6 1.6
nextflow 0.25.7, 0.26.3, 19.04.1 0.26.3
nwchem 6.6-mpi 6.6-mpi
octave 4.2.1 4.2.1
openbabel 2.4.1 2.4.1
openmolcas 18.0 18.0
openmpi 2.1.0-gcc, 2.1.1-intel, 3.0.0-gcc, 3.1.2-gcc 3.0.0-gcc
paml 4.9e 4.9e
papi 5.6.0 5.6.0
parallel 20170422 20170422
paraview 4.4.0, 5.3.0 5.3.0
perl 5.24.1, 5.26.0 5.26.0
perl5lib 5.26.0 5.26.0
pgi 18.10, 19.4 18.10
phylobayes 4.1c 4.1c
phylobayes-mpi 01cbc7d 01cbc7d
pigz 2.4
plink 1.9-170906, 2.0-20170920 1.9-170906
plumed 2.4.0-intelmpi-nxv, 2.4.0-nxv, 2.4.0 2.4.0
prank 170427 170427
primer3 2.4.0 2.4.0
proj 5.2.0 5.2.0
python 2.7.15, 3.6.3 3.6.3
qe 6.1.0-intelmpi, 6.3-intelmpi, 6.1.0, 6.3 6.3
qt 5.8.0 5.8.0
qualimap 2.2.1 2.2.1
quast 4.5-1, 4.6.1 4.6.1
raxml 8.2.11 8.2.11
relion 2.1-gpu, 3.0-gpu, 3.0 2.1-gpu
repeatmasker 4.0.7 4.0.7
rmcprofile 6.7.0 6.7.0
ruby 2.4.1 2.4.1
salmon 0.13.1 0.13.1
samtools 0.1.19, 1.4, 1.4.1, 1.6, 1.8, 1.9 1.9
sbcl 1.5.4
scalapack 2.0.2-intel 2.0.2-intel
scilab 6.0.0 6.0.0
scrappie 1.4.1 1.4.1
seqtk 1.2 1.2
shengbte 1.1.1 1.1.1
singularity 2.6.1 2.6.1
skewer 0.2.2 0.2.2
smac3 0.8.0 0.8.0
soapdenovo2 r241 r241
spades 3.11.1 3.11.1
sparsehash 2.0.3 2.0.3
spglib 1.10.3 1.10.3
sqlite 3.29.0 3.29.0
sratools 2.8.2-1 2.8.2-1
stacks 1.46 1.46
star 2.7.0f, 2.5.3a, 2.6.1a 2.7.0f
starccm 11.06.011-R8, 12.02.010, 12.02.010-R8, 12.06.011, 12.06.011-R8, 2019.1.1-R8 12.06.011-R8
stata 13, 15 13
swig 3.0.12 3.0.12
tbb 2018_U2 2018_U2
texinfo 4.8, 6.6 6.6
tmux 2.7 2.7
tophat 2.1.1 2.1.1
transdecoder 5.0.2 5.0.2
trimgalore 0.4.5-1 0.4.5-1
trimmomatic 0.36 0.36
trinity 2.4.0 2.4.0
udunits 2.2.26 2.2.26
valgrind 3.12.0 3.12.0
vcftools 0.1.15 0.1.15
vmd 1.9.3 1.9.3
wise2 2.4.1 2.4.1
yasm 1.3.0 1.3.0
zsh 5.4.1, 5.4.2 5.4.2