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HPC @ QMUL

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Introduction
Introduction
HPC compute nodes
HPC compute nodes
- Overview
- DDG nodes
- DDY nodes
- EHC nodes
- RDG nodes
- SBG nodes
- SDX nodes
- SMF nodes
- SRM nodes
- VHM nodes
- XDG nodes
- XHG nodes
- XLG nodes
- Andrena cluster
Using the cluster
Using the cluster
- Citing Apocrita in publications
- Moving from Grid Engine to Slurm
- Slurm Quick Reference
- Submitting jobs
  Submitting jobs
- Using arrays
- Monitoring jobs
- Debugging jobs
- Using modules
- Using GPUs
- Compiling C, C++ and Fortran Code
- Choosing a Python distribution
- Tuning job requests
- Job statistics
- Man pages
Storage
Storage
- Storage systems
- Quotas
- Scratch
- Archive
- Using $TMPDIR
- Moving data
- Deleting files
- Backups and snapshots
- Public datasets
- Globus
  Globus
Application documentation
Application documentation
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- Languages
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- Devtools and libraries
  Devtools and libraries
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- Data management
  Data management
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- Numerical libraries
  Numerical libraries
- General applications
  General applications
  - Dua
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- Bioinformatics applications
  Bioinformatics applications
  - ABySS
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  - BamTools
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  - MAFFT
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  - Qctool
  - Qualimap
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  - RAxML
  - RAxML Next Generation
  - RELION
  - RepeatMasker
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  - SAMtools
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  - SHAPEIT5
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- Chemistry applications
  Chemistry applications
  - CASTEP
  - CP2K
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  - VASP
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- Engineering applications
  Engineering applications
  - Abaqus
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  - COMSOL
  - CST Studio
  - OpenFOAM
  - STAR-CCM+
- Machine learning
  Machine learning
  - AlphaFold 2
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  - COLMAP
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- Mathematical applications
  Mathematical applications
  - Mathematica
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OnDemand
OnDemand
- Overview
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- CST Studio
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- RELION
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- STAR-CCM+
- Stata
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Tier 2 HPC
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