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FRC_align

FRC_align is a tool able to evaluate and analyse predictive assembly/assemblers.

FRC_align is available as a module on Apocrita.

Usage

To run the latest installed version of FRC_align, simply load the frc-align module:

 $ module load frc-align
 $ FRC --pe-sam <input_file> --genome-size <size> --output <output_file>

For full usage documentation, run FRC --help

Example job

Serial job

Here is an example job using 4 cores and 4GB of memory:

#!/bin/sh
#$ -cwd
#$ -j y
#$ -pe smp 4
#$ -l h_vmem=1G
#$ -l h_rt=1:0:0

module load frc-align
FRC --pe-sam Illumina.bam --genome-size 450000000 --output output_frc

Reference